Cubic Spline Interpolation Reveals Different Evolutionary Trends of Various Species

Zhiqiang Li; Peter Z. Revesz

doi:10.1051/matecconf/20167604047

All issues

Volume 76 (2016)

MATEC Web Conf., 76 (2016) 04047

References

Open Access

Issue		MATEC Web Conf. Volume 76, 2016 20^th International Conference on Circuits, Systems, Communications and Computers (CSCC 2016)


Article Number		04047
Number of page(s)		5
Section		Computers
DOI		https://doi.org/10.1051/matecconf/20167604047
Published online		21 October 2016

D. Baum and S. Smith, Tree Thinking: An Introduction to Phylogenetic Biology, (Roberts and Company Publishers, 2012) [Google Scholar]
B.G. Hall, Phylogenetic Trees Made Easy: A How to Manual, 4th edition, ( Sinauer Associates,2011) [Google Scholar]
P. Lerney, M. Salemi, and A.-M Vandamme, editors. The Phylogenetic Handbook: A Practical Approach to Phylogenetic Analysis and Hypothesis Testing, 2nd edition, ( Cambridge University Press, 2009) [Google Scholar]
P.Z. Revesz and Z. Li, “Incremental phylogenetics by repeated insertions: An evolutionary tree algorithm,” International Journal of Biology and Biomedical Engineering, 10, 1, 148–158, (2015) [Google Scholar]
P.Z. Revesz, Introduction to Databases: From Biological to Spatio-Temporal, ( Springer, New York, 2010) [Google Scholar]
P.Z. Revesz, “An algorithm for constructing hypothetical evolutionary trees using common mutations similarity matrices,”Proc. 4th ACM International Conference on Bioinformatics and Computational Biology, 731–734, ( ACM Press, New York, 2013) [Google Scholar]
P.Z. Revesz, “A recurrence equation-based solution for the cubic spline interpolation problem,” International Journal of Mathematical Models and Methods in Applied Sciences, 9, 1, 446–452, (2015) [Google Scholar]
P.Z. Revesz and T. Triplet, “Classification integration and reclassification using constraint databases,” Artificial Intelligence in Medicine, 49, 2, 79–91, (2010) [CrossRef] [Google Scholar]
P.Z. Revesz and T. Triplet, “Temporal data classification using linear classifiers,” Information Systems, 36, 1, 30–41, (2011) [CrossRef] [Google Scholar]
N. Saitou and M. Nei, “The neighbor-joining method: A new method for reconstructing phylogenetic trees,“ Molecular Biological Evolution, 4, 406–425, (1987) [Google Scholar]
M. Shortridge, T. Triplet, P.Z. Revesz, M. Griep, and R. Powers, “Bacterial protein structures reveal phylum dependent divergence,” Computational Biology and Chemistry, 35, 1, 24–33 (2011) [CrossRef] [Google Scholar]
R.R. Sokal, and C. D. Michener, “A statistical method for evaluating systematic relationships,“ University of Kansas Science Bulletin, 38, 1409–1438, (1958) [Google Scholar]
T. Triplet, M. Shortridge, M. Griep, J. Stark, R. Powers, and P.Z. Revesz, “PROFESS: A protein function, evolution, structure and sequence database,” Database -- The Journal of Biological Databases and Curation, (2010) [Google Scholar]
S. Zhang and T. Wang, “A new distance-based approach for phylogenetic analysis of protein sequences,” International Journal of Biology and Biomedical Engineering, 3, 3, 35–42, (2009) [Google Scholar]

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[1] D. Baum and S. Smith, Tree Thinking: An Introduction to Phylogenetic Biology, (Roberts and Company Publishers, 2012) [Google Scholar]

[2] B.G. Hall, Phylogenetic Trees Made Easy: A How to Manual, 4th edition, ( Sinauer Associates,2011) [Google Scholar]

[3] P. Lerney, M. Salemi, and A.-M Vandamme, editors. The Phylogenetic Handbook: A Practical Approach to Phylogenetic Analysis and Hypothesis Testing, 2nd edition, ( Cambridge University Press, 2009) [Google Scholar]

[4] P.Z. Revesz and Z. Li, “Incremental phylogenetics by repeated insertions: An evolutionary tree algorithm,” International Journal of Biology and Biomedical Engineering, 10, 1, 148–158, (2015) [Google Scholar]

[5] P.Z. Revesz, Introduction to Databases: From Biological to Spatio-Temporal, ( Springer, New York, 2010) [Google Scholar]

[6] P.Z. Revesz, “An algorithm for constructing hypothetical evolutionary trees using common mutations similarity matrices,”Proc. 4th ACM International Conference on Bioinformatics and Computational Biology, 731–734, ( ACM Press, New York, 2013) [Google Scholar]

[7] P.Z. Revesz, “A recurrence equation-based solution for the cubic spline interpolation problem,” International Journal of Mathematical Models and Methods in Applied Sciences, 9, 1, 446–452, (2015) [Google Scholar]

[8] P.Z. Revesz and T. Triplet, “Classification integration and reclassification using constraint databases,” Artificial Intelligence in Medicine, 49, 2, 79–91, (2010) [CrossRef] [Google Scholar]

[9] P.Z. Revesz and T. Triplet, “Temporal data classification using linear classifiers,” Information Systems, 36, 1, 30–41, (2011) [CrossRef] [Google Scholar]

[10] N. Saitou and M. Nei, “The neighbor-joining method: A new method for reconstructing phylogenetic trees,“ Molecular Biological Evolution, 4, 406–425, (1987) [Google Scholar]

[11] M. Shortridge, T. Triplet, P.Z. Revesz, M. Griep, and R. Powers, “Bacterial protein structures reveal phylum dependent divergence,” Computational Biology and Chemistry, 35, 1, 24–33 (2011) [CrossRef] [Google Scholar]

[12] R.R. Sokal, and C. D. Michener, “A statistical method for evaluating systematic relationships,“ University of Kansas Science Bulletin, 38, 1409–1438, (1958) [Google Scholar]

[13] T. Triplet, M. Shortridge, M. Griep, J. Stark, R. Powers, and P.Z. Revesz, “PROFESS: A protein function, evolution, structure and sequence database,” Database -- The Journal of Biological Databases and Curation, (2010) [Google Scholar]

[14] S. Zhang and T. Wang, “A new distance-based approach for phylogenetic analysis of protein sequences,” International Journal of Biology and Biomedical Engineering, 3, 3, 35–42, (2009) [Google Scholar]